Sarah Djebali

Publications
Article type:
Data for "Evolution of regulatory chromatin contacts: insights from duplicated genes". Victor Lefebvre, Sylvain Foissac, Sarah Djebali, et al., 2026. DOI: 10.5281/zenodo.21392106
Data for "Evolution of regulatory chromatin contacts: insights from duplicated genes". Victor Lefebvre, Sylvain Foissac, Sarah Djebali, et al., 2026. DOI: 10.5281/zenodo.21392107
nf-core/smrnaseq: v2.4.1 - 2026-01-07 - Navy Iron Boxer Patch. Alexander Peltzer, Anabella Trigila, ..., Sarah Djebali, et al., 2026. DOI: 10.5281/zenodo.18173574
Catestatin decreases duodenal hypermotility to improve glucose homeostasis in diabetic male mice. Anne Abot, Céline El Samrout, ..., Sarah Djebali, et al., Gut Science 2026. DOI: 10.1136/gutsci-2026-000021
Evolution of regulatory chromatin contacts: insights from duplicated genes. Victor Lefebvre, Sylvain Foissac, Sarah Djebali, et al., bioRxiv 2026. DOI: 10.64898/2026.07.22.739131
Empowering bioinformatics communities with Nextflow and nf-core. Björn E. Langer, Andreia Neves do Amaral, ..., Sarah Djebali, et al., Genome Biology 2025. DOI: 10.1186/s13059-025-03673-9
Differences in maternal diet fiber content influence patterns of gene expression and chromatin accessibility in fetuses and piglets. Smahane Chalabi, Linda M. P. Loonen, ..., Sarah Djebali, et al., Genomics 2025. DOI: 10.1016/j.ygeno.2025.110995
Polygenic risk score prediction accuracy convergence. Léo Henches, Jihye Kim, ..., Arthur Frouin, ..., Sarah Djebali, et al., Human Genetics and Genomics Advances 2025. DOI: 10.1016/j.xhgg.2025.100457
Guiding eQTL mapping and genomic prediction of gene expression in three pig breeds with tissue-specific epigenetic annotations from early development. Fanny Mollandin, Hervé Acloque, ..., Sarah Djebali, et al., bioRxiv 2025. DOI: 10.1101/2025.03.05.641618
Porcine Intestinal Organoids as Models of Regional Gut and Animal Identities: a Transcriptomic Approach. Fany Blanc, Smahane Chalabi, ..., Sarah Djebali, et al., bioRxiv 2025. DOI: 10.1101/2025.10.29.679705
Guiding eQTL mapping and genomic prediction of gene expression in three pig breeds with tissue-specific epigenetic annotations from early development. Fanny Mollandin, Hervé Acloque, ..., Sarah Djebali, et al., Genomics 2025. DOI: 10.1016/j.ygeno.2025.111158
Differential chromatin accessibility between pre- and post-natal stages highlights putative causal regulatory variants in pig skeletal muscle. Ervin Shishmani, Andréa Rau, Sarah Djebali, et al., bioRxiv 2025. DOI: 10.1101/2025.11.27.690935
Single-cell omics uncover gene dynamics shaping embryonic and extra embryonic lineages in pig blastocysts. Adrien Dufour, Marie-Noëlle M.-N. Rossignol, ..., Sarah Djebali, et al., iScience 2025. DOI: 10.1016/j.isci.2025.114519
Single-cell omics reveal distinct gene regulatory dynamics underpinning embryonic and extraembryonic lineage functions during pig blastocyst development. Adrien Dufour, Marie‐Noëlle Rossignol, ..., Sarah Djebali, et al., bioRxiv 2025. DOI: 10.1101/2025.06.15.657618
Single-Cell Omics Reveal Distinct Gene Regulatory Dynamics Underpinning Embryonic and Extraembryonic Lineage Functions During Pig Blastocyst Development. Adrien Dufour, Marie‐Noëlle Rossignol, ..., Sarah Djebali, et al., 2025. DOI: 10.2139/ssrn.5362267
Empowering bioinformatics communities with Nextflow and nf-core. Björn E. Langer, Andreia J. Amaral, ..., Sarah Djebali, et al., bioRxiv 2024. DOI: 10.1101/2024.05.10.592912
Efficient indexing and querying of annotations in a pangenome graph. Adam M. Novak, Dickson Chung, ..., Sarah Djebali, ..., Jean Monlong, bioRxiv 2024. DOI: 10.1101/2024.10.12.618009
Differences in maternal diet fiber content influence patterns of gene expression and chromatin accessibility in fetuses and piglets. Smahane Chalabi, Linda M. P. Loonen, ..., Sarah Djebali, et al., bioRxiv 2024. DOI: 10.1101/2024.08.13.607725
RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species. Frédéric Jehl, Fabien Degalez, ..., Sarah Djebali, et al., Frontiers in Genetics 2021. DOI: 10.3389/fgene.2021.655707
Expanded encyclopaedias of DNA elements in the human and mouse genomes. Federico Abascal, Reyes Acosta, ..., Sarah Djebali, et al., Nature 2020. DOI: 10.1038/s41586-020-2493-4
Perspectives on ENCODE. Federico Abascal, Reyes Acosta, ..., Sarah Djebali, et al., Nature 2020. DOI: 10.1038/s41586-020-2449-8
Multi-species annotation of transcriptome and chromatin structure in domesticated animals. Sylvain Foissac, Sarah Djebali, et al., BMC Biology 2019. DOI: 10.1186/s12915-019-0726-5
An atlas of human long non-coding RNAs with accurate 5′ ends. Chung-Chau Hon, Jordan A. Ramilowski, ..., Sarah Djebali, et al., Nature 2017. DOI: 10.1038/nature21374
A benchmark for RNA-seq quantification pipelines. Mingxiang Teng, Michael I. Love, ..., Sarah Djebali, et al., Genome Biology 2016. DOI: 10.1186/s13059-016-0940-1
Gene-specific patterns of expression variation across organs and species. Alessandra Breschi, Sarah Djebali, et al., Genome Biology 2016. DOI: 10.1186/s13059-016-1008-y
Bioinformatics Pipeline for Transcriptome Sequencing Analysis. Sarah Djebali, Valentin Wucher, et al., Methods in Molecular Biology 2016. DOI: 10.1007/978-1-4939-4035-6_14




