My research aims at characterizing the functional impact of structural variants.
After working on their detection from sequencing data (short and long reads, pangenomes), I’m now looking for structural variants that could help us better understand complex diseases, or diagnose patients with rare undiagnosed diseases.
And here is the PDF of my PhD thesis on “Population-Based Approaches to Characterize Copy Number Variation from Whole-Genome Sequencing in Healthy Individuals and Disease Cohorts” (LaTeX source).
Sep 23, 2024,
Methods for Interfacing with Graphs of Genomic Sequences Symposium
Lille, France
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Event
Slides
Jul 2, 2024,
International Genome Graph Symposium
Ascona, Switzerland
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Event
PDF
Jun 26, 2024,
Journées Ouvertes en Biologie, Informatique, et Mathématiques
Toulouse, France
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Event
PDF
Dec 11, 2020,
Voice of the Researcher
Genomics Institute, UC Santa Cruz, CA, USA
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PDF
Feb 12, 2020,
GSP-TOPMed Analysis Workshop
New York City, NY, USA
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Event
PDF
Nov 7, 2019,
Genome Informatics
Cold Spring Harbor Laboratory, NY, USA
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Event
PDF
Slides
Oct 15, 2019,
GRC-GIAB Workshop (ASHG19)
Houston, TX, USA
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Event
PDF
Oct 12, 2019,
Northern California Computational Biology Symposium
UC Davis, CA, USA
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Event
PDF
May 18, 2017,
Human Genetics Research Day, McGill University
Montreal, Canada
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Event
PDF
Apr 24, 2017,
Canadian Human and Statistical Genetics Meeting
Quebec, Canada
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Event
PDF
Sep 21, 2014,
Genome Informatics
Cambridge, UK
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Event
PDF
Jun 5, 2014,
Human Genetics Research Day, McGill University
Montreal, Canada
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Event
PDF
Dec 5, 2024,
Journées Pangénomes, BioinfOmics (INRAE)
Toulouse, France
Event
Sep 16, 2024,
Atelier INSERM
Bordeaux/Brest, France
Event
Slides
Video
Apr 8, 2024,
Human Genome Meeting (HUGO)
Rome, Italy
Event
Slides
Oct 15, 2019,
American Society of Human Genetics (ASHG) Annual Meeting
Houston, USA
Event
Sep 1, 2014,
Human Genetics Dpt., McGill University
Montreal, Canada
Jul 21, 2014,
System Biology Dpt., McGill University
Montreal, Canada
I regularly write down notes about the tools and programming languages I use in a separate website. There are instructions to setup my working environment (Emacs-based) or things I don’t use often enough to remember but enough to collectively waste my time re-googling. I also put some exploratory analyses that might be helpful or interesting to some.